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1.

Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates.

Xia, Bo; Yan, Yun; Baron, Maayan; Wagner, Florian; Barkley, Dalia; Chiodin, Marta; Kim, Sang Y; Keefe, David L; Alukal, Joseph P; Boeke, Jef D; Yanai, Itai.

Cell ; 180(2): 248-262.e21, 2020 01 23.

Artículo en Inglés | MEDLINE | ID: mdl-31978344

2.

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.

Singer, Meromit; Wang, Chao; Cong, Le; Marjanovic, Nemanja D; Kowalczyk, Monika S; Zhang, Huiyuan; Nyman, Jackson; Sakuishi, Kaori; Kurtulus, Sema; Gennert, David; Xia, Junrong; Kwon, John Y H; Nevin, James; Herbst, Rebecca H; Yanai, Itai; Rozenblatt-Rosen, Orit; Kuchroo, Vijay K; Regev, Aviv; Anderson, Ana C.

Cell ; 166(6): 1500-1511.e9, 2016 Sep 08.

Artículo en Inglés | MEDLINE | ID: mdl-27610572

3.

Transcription-replication interactions reveal bacterial genome regulation.

Pountain, Andrew W; Jiang, Peien; Yao, Tianyou; Homaee, Ehsan; Guan, Yichao; McDonald, Kevin J C; Podkowik, Magdalena; Shopsin, Bo; Torres, Victor J; Golding, Ido; Yanai, Itai.

Nature ; 626(7999): 661-669, 2024 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-38267581

4.

On the genetic basis of tail-loss evolution in humans and apes.

Xia, Bo; Zhang, Weimin; Zhao, Guisheng; Zhang, Xinru; Bai, Jiangshan; Brosh, Ran; Wudzinska, Aleksandra; Huang, Emily; Ashe, Hannah; Ellis, Gwen; Pour, Maayan; Zhao, Yu; Coelho, Camila; Zhu, Yinan; Miller, Alexander; Dasen, Jeremy S; Maurano, Matthew T; Kim, Sang Y; Boeke, Jef D; Yanai, Itai.

Nature ; 626(8001): 1042-1048, 2024 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-38418917

5.

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.

Singer, Meromit; Wang, Chao; Cong, Le; Marjanovic, Nemanja D; Kowalczyk, Monika S; Zhang, Huiyuan; Nyman, Jackson; Sakuishi, Kaori; Kurtulus, Sema; Gennert, David; Xia, Junrong; Kwon, John Y H; Nevin, James; Herbst, Rebecca H; Yanai, Itai; Rozenblatt-Rosen, Orit; Kuchroo, Vijay K; Regev, Aviv; Anderson, Ana C.

Cell ; 171(5): 1221-1223, 2017 11 16.

Artículo en Inglés | MEDLINE | ID: mdl-29149608

6.

Exploring tissue architecture using spatial transcriptomics.

Rao, Anjali; Barkley, Dalia; França, Gustavo S; Yanai, Itai.

Nature ; 596(7871): 211-220, 2021 08.

Artículo en Inglés | MEDLINE | ID: mdl-34381231

7.

Author Correction: The mid-developmental transition and the evolution of animal body plans.

Levin, Michal; Anavy, Leon; Cole, Alison G; Winter, Eitan; Mostov, Natalia; Khair, Sally; Senderovich, Naftalie; Kovalev, Ekaterina; Silver, David H; Feder, Martin; Fernandez-Valverde, Selene L; Nakanishi, Nagayasu; Simmons, David; Simakov, Oleg; Larsson, Tomas; Liu, Shang-Yun; Jerafi-Vider, Ayelet; Yaniv, Karina; Ryan, Joseph F; Martindale, Mark Q; Rink, Jochen C; Arendt, Detlev; Degnan, Sandie M; Degnan, Bernard M; Hashimshony, Tamar; Yanai, Itai.

Nature ; 575(7782): E3, 2019 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-31673121

8.

Cancer cell states and emergent properties of the dynamic tumor system.

Barkley, Dalia; Rao, Anjali; Pour, Maayan; França, Gustavo S; Yanai, Itai.

Genome Res ; 31(10): 1719-1727, 2021 10.

Artículo en Inglés | MEDLINE | ID: mdl-34599005

9.

Host inflammatory dynamics reveal placental immune modulation by Group B Streptococcus during pregnancy.

Kuperwaser, Felicia; Avital, Gal; Vaz, Michelle J; Noble, Kristen N; Dammann, Allison N; Randis, Tara M; Aronoff, David M; Ratner, Adam J; Yanai, Itai.

Mol Syst Biol ; 19(3): e11021, 2023 03 09.

Artículo en Inglés | MEDLINE | ID: mdl-36744393

10.

Quantifying gene duplication.

Yanai, Itai.

Nat Rev Genet ; 23(4): 196-197, 2022 04.

Artículo en Inglés | MEDLINE | ID: mdl-35132201

11.

Gene expression levels modulate germline mutation rates through the compound effects of transcription-coupled repair and damage.

Xia, Bo; Yanai, Itai.

Hum Genet ; 141(6): 1211-1222, 2022 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-34482438

12.

A periodic table of cell types.

Xia, Bo; Yanai, Itai.

Development ; 146(12)2019 06 27.

Artículo en Inglés | MEDLINE | ID: mdl-31249003

13.

A molecular handbook for human development.

Kuperwaser, Felicia; Yanai, Itai.

Nature ; 590(7844): 43-44, 2021 02.

Artículo en Inglés | MEDLINE | ID: mdl-33500582

14.

The mid-developmental transition and the evolution of animal body plans.

Levin, Michal; Anavy, Leon; Cole, Alison G; Winter, Eitan; Mostov, Natalia; Khair, Sally; Senderovich, Naftalie; Kovalev, Ekaterina; Silver, David H; Feder, Martin; Fernandez-Valverde, Selene L; Nakanishi, Nagayasu; Simmons, David; Simakov, Oleg; Larsson, Tomas; Liu, Shang-Yun; Jerafi-Vider, Ayelet; Yaniv, Karina; Ryan, Joseph F; Martindale, Mark Q; Rink, Jochen C; Arendt, Detlev; Degnan, Sandie M; Degnan, Bernard M; Hashimshony, Tamar; Yanai, Itai.

Nature ; 531(7596): 637-641, 2016 Mar 31.

Artículo en Inglés | MEDLINE | ID: mdl-26886793

15.

Gene expression dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms.

Levin, Michal; Zalts, Harel; Mostov, Natalia; Hashimshony, Tamar; Yanai, Itai.

Nucleic Acids Res ; 48(11): 5926-5938, 2020 06 19.

Artículo en Inglés | MEDLINE | ID: mdl-32421815

16.

Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast.

Agmon, Neta; Temple, Jasmine; Tang, Zuojian; Schraink, Tobias; Baron, Maayan; Chen, Jun; Mita, Paolo; Martin, James A; Tu, Benjamin P; Yanai, Itai; Fenyö, David; Boeke, Jef D.

Nucleic Acids Res ; 48(1): 486-499, 2020 01 10.

Artículo en Inglés | MEDLINE | ID: mdl-31745563

17.

Development and Evolution through the Lens of Global Gene Regulation.

Yanai, Itai.

Trends Genet ; 34(1): 11-20, 2018 01.

Artículo en Inglés | MEDLINE | ID: mdl-29061469

18.

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.

Hashimshony, Tamar; Feder, Martin; Levin, Michal; Hall, Brian K; Yanai, Itai.

Nature ; 519(7542): 219-22, 2015 Mar 12.

Artículo en Inglés | MEDLINE | ID: mdl-25487147

19.

The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.

Schiffer, Philipp H; Polsky, Avital L; Cole, Alison G; Camps, Julia I R; Kroiher, Michael; Silver, David H; Grishkevich, Vladislav; Anavy, Leon; Koutsovoulos, Georgios; Hashimshony, Tamar; Yanai, Itai.

Proc Natl Acad Sci U S A ; 115(17): 4459-4464, 2018 04 24.

Artículo en Inglés | MEDLINE | ID: mdl-29626130

20.

Bimodal Evolutionary Developmental miRNA Program in Animal Embryogenesis.

Avital, Gal; França, Gustavo S; Yanai, Itai.

Mol Biol Evol ; 35(3): 646-654, 2018 Mar 01.

Artículo en Inglés | MEDLINE | ID: mdl-29237075

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Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates.

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.

Transcription-replication interactions reveal bacterial genome regulation.

On the genetic basis of tail-loss evolution in humans and apes.

A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells.

Exploring tissue architecture using spatial transcriptomics.

Author Correction: The mid-developmental transition and the evolution of animal body plans.

Cancer cell states and emergent properties of the dynamic tumor system.

Host inflammatory dynamics reveal placental immune modulation by Group B Streptococcus during pregnancy.

Quantifying gene duplication.

Gene expression levels modulate germline mutation rates through the compound effects of transcription-coupled repair and damage.

A periodic table of cell types.

A molecular handbook for human development.

The mid-developmental transition and the evolution of animal body plans.

Gene expression dynamics are a proxy for selective pressures on alternatively polyadenylated isoforms.

Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast.

Development and Evolution through the Lens of Global Gene Regulation.

Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.

The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.

Bimodal Evolutionary Developmental miRNA Program in Animal Embryogenesis.